EMCqMRI.core.utilities.image_utilities module

EMCqMRI.core.utilities.image_utilities.calculate_snr(data, masks, std)[source]

EMCqMRI.core.utilities.image_utilities.convert_shape_to_pair(shape_matrix)[source]

EMCqMRI.core.utilities.image_utilities.convert_to_pair_matrix(img_series)[source]

EMCqMRI.core.utilities.image_utilities.get_data_information(weighted_image)[source]

EMCqMRI.core.utilities.image_utilities.imagebrowse_slider(cube, cube2=[], axis=0, vmin_=0, vmax_=2, kwargs=[])[source]

Display a 3d ndarray with a slider to move along the third dimension.

Extra keyword arguments are passed to imshow

EMCqMRI.core.utilities.image_utilities.load_hdf5(path)[source]

EMCqMRI.core.utilities.image_utilities.pad(input_image, pad_size)[source]

EMCqMRI.core.utilities.image_utilities.plot_scatter(x1, x2)[source]

EMCqMRI.core.utilities.image_utilities.saveDataPickle(data, save_results_path, filename)[source]

EMCqMRI.core.utilities.image_utilities.saveItermediateResults(data, args, epoch)[source]

EMCqMRI.core.utilities.image_utilities.save_hdf5(data, path, args, epoch)[source]

EMCqMRI.core.utilities.image_utilities.unpad(input_image, padding_mask)[source]

EMCqMRI.core.utilities.image_utilities.visualise_h5_image(imagePath)[source]